miRBase entry: str-mir-7880f

Stem-loop str-mir-7880f

Accession

MI0027094

Description

Strongyloides ratti str-mir-7880f precursor miRNA

Sequence

GGCCUGGUUAGUCGCAAAGAauuuuucagugauucUUUGCGAUUGUUUCCAGGCCAGC
(((((((.(((((((((((((((.......)))))))))))))))...)))))))...

Structure

---       --U               uu 
   GGCCUGG   UAGUCGCAAAGAauu  u
   |||||||   |||||||||||||||  c
   CCGGACC   GUUAGCGUUUcuuag  a
CGA       UUU               ug

Annotation confidence Not enough data

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Genome context

Sratti_scf00001_ChrX: 2080916-2080973 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from str-mir-7880f

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature str-miR-7880f-5p

Accession	MIMAT0033321
Description	Strongyloides ratti str-miR-7880f-5p mature miRNA
Sequence	1 - GGCCUGGUUAGUCGCAAAGA - 20
Evidence	experimental Illumina [1]

Mature str-miR-7880f-3p

Accession	MIMAT0033322
Description	Strongyloides ratti str-miR-7880f-3p mature miRNA
Sequence	36 - UUUGCGAUUGUUUCCAGGCCAGC - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260