Stem-loop str-mir-252a

Accession

MI0027096

Description

Strongyloides ratti str-mir-252a precursor miRNA

Sequence

673079 reads, 11584.0 reads per million, 12 experiments

UUAAGUAGUUGUGCCGUAGGUCgucguuaauagugaaucgaCCUACACACGGCUCCUUAAGA
(((((.(((((((..((((((((...............)))))))).))))))).)))))..

Structure

--     U       CC        ucguua 
  UUAAG AGUUGUG  GUAGGUCg      a
  ||||| |||||||  ||||||||      u
  AAUUC UCGGCAC  CAUCCagc      a
AG     C       -A        uaagug 

Annotation confidence High

Genome context

Sratti_scf00001_Chr02: 3011005-3011066 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from str-mir-252a

Mature str-miR-252a-5p

• Accession: MIMAT0033325
• Description: Strongyloides ratti str-miR-252a-5p mature miRNA
• Sequence: 1 - UUAAGUAGUUGUGCCGUAGGUC - 22
• Evidence: experimental ; Illumina [1]

Mature str-miR-252a-3p

• Accession: MIMAT0033326
• Description: Strongyloides ratti str-miR-252a-3p mature miRNA
• Sequence: 42 - CCUACACACGGCUCCUUAAGA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260