Stem-loop str-mir-7880h

Accession

MI0027097

Description

Strongyloides ratti str-mir-7880h precursor miRNA

Sequence

GGUUAGGAUCAGUUUGGCAAAUAuaaaguuuaaauuauuaUUUGCGACUGUAUCCAAAACCCA
((((.(((((((((..(((((((...............)))))))))))).))))..))))..

Structure

--    -A    -     UG       uaaagu 
  GGUU  GGAU CAGUU  GCAAAUA      u
  ||||  |||| |||||  |||||||      u
  CCAA  CCUA GUCAG  CGUUUau      a
AC    AA    U     --       uauuaa 

Annotation confidence Low

Genome context

Sratti_scf00001_Chr01: 398136-398198 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880h

Mature str-miR-7880h-5p

• Accession: MIMAT0033327
• Description: Strongyloides ratti str-miR-7880h-5p mature miRNA
• Sequence: 1 - GGUUAGGAUCAGUUUGGCAAAUA - 23
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880h-3p

• Accession: MIMAT0033328
• Description: Strongyloides ratti str-miR-7880h-3p mature miRNA
• Sequence: 41 - UUUGCGACUGUAUCCAAAACCCA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260