Stem-loop str-mir-7880h

Accession

MI0027097

Description

Strongyloides ratti str-mir-7880h precursor miRNA

Sequence

5844074 reads, 112063.0 reads per million, 12 experiments

GGUUAGGAUCAGUUUGGCAAAUAUaaaguuuaaauuauuaUUUGCGACUGUAUCCAAAACCCa
((((.(((((((((..(((((((...............)))))))))))).))))..))))..

Structure

--    -A    -     UG       Uaaagu 
  GGUU  GGAU CAGUU  GCAAAUA      u
  ||||  |||| |||||  |||||||      u
  CCAA  CCUA GUCAG  CGUUUau      a
aC    AA    U     --       uauuaa 

Annotation confidence High

Genome context

Sratti_scf00001_Chr01: 398136-398198 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880h

Mature str-miR-7880h-5p

• Accession: MIMAT0033327
• Description: Strongyloides ratti str-miR-7880h-5p mature miRNA
• Sequence: 1 - GGUUAGGAUCAGUUUGGCAAAUAU - 24
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880h-3p

• Accession: MIMAT0033328
• Description: Strongyloides ratti str-miR-7880h-3p mature miRNA
• Sequence: 41 - UUUGCGACUGUAUCCAAAACCC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260