miRBase entry: str-mir-7880i

Stem-loop str-mir-7880i


Accession
MI0027098
Description
Strongyloides ratti str-mir-7880i precursor miRNA


Sequence

GGUCUAGUGAUGGUAGCAAAUUaguauauugaaaacuaaaUUUGCGACCAAUCCAGGACCCG
(((((.(.((((((.((((((((((.........))).))))))).))).)))).)))))..

Structure
--     A U   -   A       -   aua 
  GGUCU G GAU GGU GCAAAUU agu   u
  ||||| | ||| ||| ||||||| |||   u
  CCAGG C CUA CCA CGUUUaa uca   g
GC     A -   A   G       a   aaa 


Annotation confidence Not enough data
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Genome context
Sratti_scf00001_Chr01: 396337-396398 [-]
Clustered miRNAs
20 other miRNAs are < 10 kb from str-mir-7880i
Name Accession Chromosome Start End Strand Confidence




Database links

Mature str-miR-7880i-5p

Accession MIMAT0033329
Description Strongyloides ratti str-miR-7880i-5p mature miRNA
Sequence 1 - GGUCUAGUGAUGGUAGCAAAUU - 22
Evidence experimental
Illumina [1]

Mature str-miR-7880i-3p

Accession MIMAT0033330
Description Strongyloides ratti str-miR-7880i-3p mature miRNA
Sequence 41 - UUUGCGACCAAUCCAGGACCCG - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23729632
    Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
    "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
    "Genome Biol Evol (2013) 5:1246-1260