Stem-loop str-mir-7880e-2

Accession

MI0027101

Description

Strongyloides ratti str-mir-7880e-2 precursor miRNA

Sequence

UGGUUGGAAUGGUCAGCAAAUAuauuuuuauauaaguauauacauuaUUUGCGACCAAAUCCAGGCCACG
((((((((.(((((.(((((((......((((....)))).....))))))))))))..)))).))))..

Structure

--    -    -A     A       uauuuu    u 
  UGGU UGGA  UGGUC GCAAAUA      uaua a
  |||| ||||  ||||| |||||||      ||||  
  ACCG ACCU  ACCAG CGUUUau      auau a
GC    G    AA     -       -uacau    g 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_ChrX: 2081103-2081172 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from str-mir-7880e-2

Mature str-miR-7880e-3p

• Accession: MIMAT0033320
• Description: Strongyloides ratti str-miR-7880e-3p mature miRNA
• Sequence: 48 - UUUGCGACCAAAUCCAGGCCACG - 70
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880e-2-5p

• Accession: MIMAT0033335
• Description: Strongyloides ratti str-miR-7880e-2-5p mature miRNA
• Sequence: 1 - UGGUUGGAAUGGUCAGCAAAUA - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260