miRBase entry: str-mir-92

Stem-loop str-mir-92

Accession

MI0027112

Description

Strongyloides ratti str-mir-92 precursor miRNA

Sequence

AGGUUGGAGCAUGCGCCAUAUUuuugauagauuauaauaaUAUUGCACACGUCCCGGCCUGA
(((((((.((.((.((.(((((.(((........))).))))).)).)).)).)))))))..

Structure

--       A  A  C  C     u   aua 
  AGGUUGG GC UG GC AUAUU uug   g
  ||||||| || || || ||||| |||    
  UCCGGCC UG AC CG UAUaa aau   a
AG       C  C  A  U     u   auu

Annotation confidence Not enough data

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Genome context

Sratti_scf00001_Chr02: 4795288-4795349 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from str-mir-92

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature str-miR-92-5p

Accession	MIMAT0033356
Description	Strongyloides ratti str-miR-92-5p mature miRNA
Sequence	1 - AGGUUGGAGCAUGCGCCAUAUU - 22
Evidence	experimental Illumina [1]

Mature str-miR-92-3p

Accession	MIMAT0033357
Description	Strongyloides ratti str-miR-92-3p mature miRNA
Sequence	41 - UAUUGCACACGUCCCGGCCUGA - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260