Stem-loop str-mir-7880k

Accession

MI0027113

Description

Strongyloides ratti str-mir-7880k precursor miRNA

Sequence

80706 reads, 1602.0 reads per million, 12 experiments

GGUCAGAAAUGGUUGCAAAUUaguaguuugaagacuaaUUUGUGACCUUUCAAUGAUCAG
(((((((((.((((((((((((((.........))))))))))))))))))..)))))..

Structure

--     --    U              agu 
  GGUCA  GAAA GGUUGCAAAUUagu   u
  |||||  |||| ||||||||||||||   u
  CUAGU  CUUU CCAGUGUUUaauca   g
GA     AA    -              gaa 

Annotation confidence High

Genome context

Sratti_scf00001_Chr01: 395383-395442 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880k

Mature str-miR-7880k-5p

• Accession: MIMAT0033358
• Description: Strongyloides ratti str-miR-7880k-5p mature miRNA
• Sequence: 1 - GGUCAGAAAUGGUUGCAAAUU - 21
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880k-3p

• Accession: MIMAT0033359
• Description: Strongyloides ratti str-miR-7880k-3p mature miRNA
• Sequence: 39 - UUUGUGACCUUUCAAUGAUCAG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260