Stem-loop str-mir-7880l

Accession

MI0027115

Description

Strongyloides ratti str-mir-7880l precursor miRNA

Sequence

GGCUUAGGAUGGUGCAAAUUuauuauuuuuaaauuaaUUUGCGACCAUAUCCAAAGCCCGU
(((((.((((((((((((((.(((.......))).))))))).))))..))).)))))...

Structure

---     A   --    -       u   au 
   GGCUU GGA  UGGU GCAAAUU auu  u
   ||||| |||  |||| ||||||| |||  u
   CCGAA CCU  ACCA CGUUUaa uaa  u
UGC     A   AU    G       u   au 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr01: 396872-396932 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880l

Mature str-miR-7880l-5p

• Accession: MIMAT0033362
• Description: Strongyloides ratti str-miR-7880l-5p mature miRNA
• Sequence: 1 - GGCUUAGGAUGGUGCAAAUU - 20
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880l-3p

• Accession: MIMAT0033363
• Description: Strongyloides ratti str-miR-7880l-3p mature miRNA
• Sequence: 38 - UUUGCGACCAUAUCCAAAGCCCGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260