Stem-loop str-mir-7880m

Accession

MI0027116

Description

Strongyloides ratti str-mir-7880m precursor miRNA

Sequence

GGUCGGUAGAAGAAGCAAAUUaaauauuuuuguaaauucaaUUUGCGCUCGAUACCUGACCAC
((((((((...((.(((((((....((((....))))..)))))))..))..)))).))))..

Structure

--    -    GAA  -A       aaau    u 
  GGUC GGUA   GA  GCAAAUU    auuu u
  |||| ||||   ||  |||||||    ||||  
  CCAG CCAU   CU  CGUUUaa    uaaa g
CA    U    -AG  CG       --cu    u 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr01: 395089-395151 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880m

Mature str-miR-7880m-5p

• Accession: MIMAT0033364
• Description: Strongyloides ratti str-miR-7880m-5p mature miRNA
• Sequence: 1 - GGUCGGUAGAAGAAGCAAAUU - 21
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880m-3p

• Accession: MIMAT0033365
• Description: Strongyloides ratti str-miR-7880m-3p mature miRNA
• Sequence: 42 - UUUGCGCUCGAUACCUGACCAC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260