Stem-loop str-mir-7880n

Accession

MI0027118

Description

Strongyloides ratti str-mir-7880n precursor miRNA

Sequence

UGAUGGAUAAGGAGCAAAUUugauugagaaaacuuuaaUUUGCAACUUUAUCCAUUUCACU
.(((((((((((.(((((((................)))))))..))))))))))).....

Structure

----U           -A       ugauuga 
     GAUGGAUAAGG  GCAAAUU       g
     |||||||||||  |||||||        
     UUACCUAUUUC  CGUUUaa       a
UCACU           AA       uuucaaa 

Annotation confidence Low

Genome context

Sratti_scf00001_Chr01: 396989-397049 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880n

Mature str-miR-7880n-5p

• Accession: MIMAT0033368
• Description: Strongyloides ratti str-miR-7880n-5p mature miRNA
• Sequence: 1 - UGAUGGAUAAGGAGCAAAUU - 20
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880n-3p

• Accession: MIMAT0033369
• Description: Strongyloides ratti str-miR-7880n-3p mature miRNA
• Sequence: 39 - UUUGCAACUUUAUCCAUUUCACU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260