Stem-loop str-mir-7880o

Accession

MI0027120

Description

Strongyloides ratti str-mir-7880o precursor miRNA

Sequence

UGGUUGGAUGAGAAGCAAAUUuuguuuuuacuuauucaaUUUGCGACUAUAUCCAGGCCAUU
((((((((((((..(((((((..((........))..)))))))..)).)))))).))))..

Structure

--    -      -  AA       uu  uuu 
  UGGU UGGAUG AG  GCAAAUU  gu   u
  |||| |||||| ||  |||||||  ||    
  ACCG ACCUAU UC  CGUUUaa  ua   a
UU    G      A  AG       cu  uuc 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr01: 396672-396733 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880o

Mature str-miR-7880o-5p

• Accession: MIMAT0033372
• Description: Strongyloides ratti str-miR-7880o-5p mature miRNA
• Sequence: 1 - UGGUUGGAUGAGAAGCAAAUU - 21
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880o-3p

• Accession: MIMAT0033373
• Description: Strongyloides ratti str-miR-7880o-3p mature miRNA
• Sequence: 40 - UUUGCGACUAUAUCCAGGCCAUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260