Stem-loop str-mir-7880p

Accession

MI0027121

Description

Strongyloides ratti str-mir-7880p precursor miRNA

Sequence

GGCCAGUGAUGUCUCAAGUUcgacuuuggaucuuaaUUUGGGACCAUAUCUGUGCCAG
((((((..((((((((((((.(((....).))..))))))))).)))..))).)))..

Structure

--   -   UG   -         -c  - u 
  GGC CAG  AUG UCUCAAGUU  ga c u
  ||| |||  ||| |||||||||  || |  
  CCG GUC  UAC AGGGUUUaa  cu g u
GA   U   UA   C         uu  a g 

Annotation confidence Low

Genome context

Sratti_scf00001_Chr01: 394385-394442 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880p

Mature str-miR-7880p-5p

• Accession: MIMAT0033374
• Description: Strongyloides ratti str-miR-7880p-5p mature miRNA
• Sequence: 1 - GGCCAGUGAUGUCUCAAGUU - 20
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880p-3p

• Accession: MIMAT0033375
• Description: Strongyloides ratti str-miR-7880p-3p mature miRNA
• Sequence: 37 - UUUGGGACCAUAUCUGUGCCAG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260