Stem-loop str-mir-47

Accession

MI0027136

Description

Strongyloides ratti str-mir-47 precursor miRNA

Sequence

65223 reads, 1317.0 reads per million, 12 experiments

UAGGAGAGCUGUCUUUGUCGGUUGaauauuagaaagucuacUGUCAUGGAGUAGCUCUCUUAGA
((((((((((((((.((.((((.((...........)).)))).)).))).)))))))))))..

Structure

--           -   U  U    U  auau 
  UAGGAGAGCUG UCU UG CGGU Ga    u
  ||||||||||| ||| || |||| ||    a
  AUUCUCUCGAU AGG AC GUca cu    g
AG           G   U  U    u  gaaa 

Annotation confidence High

Genome context

Sratti_scf00002_Chr02: 5151393-5151456 [+]

Mature str-miR-47-5p

• Accession: MIMAT0033404
• Description: Strongyloides ratti str-miR-47-5p mature miRNA
• Sequence: 1 - UAGGAGAGCUGUCUUUGUCGGUUG - 24
• Evidence: experimental ; Illumina [1]

Mature str-miR-47-3p

• Accession: MIMAT0033405
• Description: Strongyloides ratti str-miR-47-3p mature miRNA
• Sequence: 42 - UGUCAUGGAGUAGCUCUCUUAGA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260