Stem-loop str-mir-8381

Accession

MI0027143

Description

Strongyloides ratti str-mir-8381 precursor miRNA

Sequence

39898 reads, 777.0 reads per million, 12 experiments

CAAAAAUUCGCAAUCAAAAGCUGucugauauacaugcUUUUGUAUUGCUGAAUUUUUGAU
((((((((((((((((((((((((.......))).))))))).))))).)))))))))..

Structure

--         -     -       -   cu 
  CAAAAAUUC GCAAU CAAAAGC UGu  g
  ||||||||| ||||| ||||||| |||  a
  GUUUUUAAG CGUUA GUUUUcg aca  u
UA         U     U       u   ua 

Annotation confidence High

Genome context

Sratti_scf00001_Chr01: 2672084-2672143 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from str-mir-8381

Mature str-miR-8381-5p

• Accession: MIMAT0033418
• Description: Strongyloides ratti str-miR-8381-5p mature miRNA
• Sequence: 1 - CAAAAAUUCGCAAUCAAAAGCUG - 23
• Evidence: experimental ; Illumina [1]

Mature str-miR-8381-3p

• Accession: MIMAT0033419
• Description: Strongyloides ratti str-miR-8381-3p mature miRNA
• Sequence: 38 - UUUUGUAUUGCUGAAUUUUUGAU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260