Stem-loop str-mir-7880v

Accession

MI0027145

Description

Strongyloides ratti str-mir-7880v precursor miRNA

Sequence

GGUCGGAUGAUUAUUGCGAAUUaguuauuuuuauacuuaaUUUGCGAUAACAUUCAAGACCAA
(((((((((.((((((((((((((.(((....))).)))))))))))))))))))..))))..

Structure

--    --     A              u   u 
  GGUC  GGAUG UUAUUGCGAAUUag uau u
  ||||  ||||| |||||||||||||| |||  
  CCAG  CUUAC AAUAGCGUUUaauu aua u
AA    AA     -              c   u 

Annotation confidence Not enough data

Genome context

Sratti_scf00001_Chr01: 394174-394236 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880v

Mature str-miR-7880v-5p

• Accession: MIMAT0033422
• Description: Strongyloides ratti str-miR-7880v-5p mature miRNA
• Sequence: 1 - GGUCGGAUGAUUAUUGCGAAUU - 22
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880v-3p

• Accession: MIMAT0033423
• Description: Strongyloides ratti str-miR-7880v-3p mature miRNA
• Sequence: 41 - UUUGCGAUAACAUUCAAGACCAA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260