Stem-loop str-mir-7880w

Accession

MI0027147

Description

Strongyloides ratti str-mir-7880w precursor miRNA

Sequence

GACAGGAAUUCUAAUUGCAAAUUgauuuuuuuaaaugucaaUUUGCAAAGUAUAUCCAAGUCGA
(((.(((...((..((((((((((((..........))))))))))))))....)))..)))..

Structure

--   -A   -AUU  AA            uuuu 
  GAC  GGA    CU  UUGCAAAUUgau    u
  |||  |||    ||  ||||||||||||     
  CUG  CCU    GA  AACGUUUaacug    u
AG   AA   AUAU  --            uaaa 

Annotation confidence Low

Genome context

Sratti_scf00001_Chr01: 395792-395855 [-]

Clustered miRNAs

20 other miRNAs are < 10 kb from str-mir-7880w

Mature str-miR-7880w-5p

• Accession: MIMAT0033426
• Description: Strongyloides ratti str-miR-7880w-5p mature miRNA
• Sequence: 1 - GACAGGAAUUCUAAUUGCAAAUU - 23
• Evidence: experimental ; Illumina [1]

Mature str-miR-7880w-3p

• Accession: MIMAT0033427
• Description: Strongyloides ratti str-miR-7880w-3p mature miRNA
• Sequence: 42 - UUUGCAAAGUAUAUCCAAGUCGA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260