Stem-loop str-mir-8390

Accession

MI0027158

Description

Strongyloides ratti str-mir-8390 precursor miRNA

Sequence

UAUUUCAAAAGUUGCAUAUGACAagauuuguuccauugUAAAUGCAUCUUUUGAGAUAGA
(((((((((((.(((((...((((...........))))..))))).)))))))))))..

Structure

--           U     AUG    gauu 
  UAUUUCAAAAG UGCAU   ACAa    u
  ||||||||||| |||||   ||||    g
  AUAGAGUUUUC ACGUA   Uguu    u
AG           U     -AA    accu 

Annotation confidence Low

Genome context

Sratti_scf00001_Chr00: 1350474-1350533 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from str-mir-8390

Mature str-miR-8390-5p

• Accession: MIMAT0033448
• Description: Strongyloides ratti str-miR-8390-5p mature miRNA
• Sequence: 1 - UAUUUCAAAAGUUGCAUAUGACA - 23
• Evidence: experimental ; Illumina [1]

Mature str-miR-8390-3p

• Accession: MIMAT0033449
• Description: Strongyloides ratti str-miR-8390-3p mature miRNA
• Sequence: 39 - UAAAUGCAUCUUUUGAGAUAGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260