Stem-loop str-mir-58

Accession

MI0027166

Description

Strongyloides ratti str-mir-58 precursor miRNA

Sequence

AUGACACUGAAUGAACUGACGuaucaagagaaucgUGAGAUCAUAUUAGUGUCAUUU
((((((((((((((.((.(((..((....))..))).)).)))).))))))))))..

Structure

--          -    A  G   ua  a 
  AUGACACUGA AUGA CU ACG  uc a
  |||||||||| |||| || |||  ||  
  UACUGUGAUU UACU GA Ugc  ag g
UU          A    A  G   ua  a 

Annotation confidence Low

Genome context

Sratti_scf00001_Chr00: 1308359-1308415 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from str-mir-58

Mature str-miR-58-5p

• Accession: MIMAT0033464
• Description: Strongyloides ratti str-miR-58-5p mature miRNA
• Sequence: 1 - AUGACACUGAAUGAACUGACG - 21
• Evidence: experimental ; Illumina [1]

Mature str-miR-58-3p

• Accession: MIMAT0033465
• Description: Strongyloides ratti str-miR-58-3p mature miRNA
• Sequence: 36 - UGAGAUCAUAUUAGUGUCAUUU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260