miRBase entry: str-mir-8379b

Stem-loop str-mir-8379b

Accession

MI0027168

Description

Strongyloides ratti str-mir-8379b precursor miRNA

Sequence

UAGCCGUCUAAGGCAGUAUUAGAaaauuuuuaauauaucUGAUACUGUAAAAGACAGCUAA
((((.((((...(((((((((((..............)))))))))))...)))).)))).

Structure

-    C    AAG           aaauuu 
 UAGC GUCU   GCAGUAUUAGA      u
 |||| ||||   |||||||||||       
 AUCG CAGA   UGUCAUAGUcu      u
A    A    AAA           auauaa

Annotation confidence Not enough data

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Genome context

Sratti_scf00002_Chr02: 6867793-6867853 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from str-mir-8379b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature str-miR-8379b-3p

Accession	MIMAT0033468
Description	Strongyloides ratti str-miR-8379b-3p mature miRNA
Sequence	1 - UAGCCGUCUAAGGCAGUAUUAGA - 23
Evidence	experimental Illumina [1]

Mature str-miR-8379b-5p

Accession	MIMAT0033469
Description	Strongyloides ratti str-miR-8379b-5p mature miRNA
Sequence	40 - UGAUACUGUAAAAGACAGCUAA - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 23729632
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
"Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
"Genome Biol Evol (2013) 5:1246-1260