Stem-loop str-mir-8396

Accession

MI0027175

Description

Strongyloides ratti str-mir-8396 precursor miRNA

Sequence

CGGGUUUAUCAUUGCCAAACUcaaaagcguuuuguaagUUUGGCACUGUAUAGGCUCCAA
.((((((((((.((((((((((((((...)))))..))))))))).)).))))))))...

Structure

--C        -  U         --     g 
   GGGUUUAU CA UGCCAAACU  caaaa  
   |||||||| || |||||||||  ||||| c
   CUCGGAUA GU ACGGUUUga  guuuu  
AAC        U  C         au     g 

Annotation confidence Low

Genome context

Sratti_scf00002_Chr01: 94485-94544 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from str-mir-8396

Mature str-miR-8396-5p

• Accession: MIMAT0033482
• Description: Strongyloides ratti str-miR-8396-5p mature miRNA
• Sequence: 1 - CGGGUUUAUCAUUGCCAAACU - 21
• Evidence: experimental ; Illumina [1]

Mature str-miR-8396-3p

• Accession: MIMAT0033483
• Description: Strongyloides ratti str-miR-8396-3p mature miRNA
• Sequence: 39 - UUUGGCACUGUAUAGGCUCCAA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260