Stem-loop str-mir-34a

Accession

MI0027176

Description

Strongyloides ratti str-mir-34a precursor miRNA

Sequence

114443 reads, 1950.0 reads per million, 12 experiments

UGGCAGUGUGGUUAGCUGGUUGUGauuuuuuagacgcucaACAGCUCACUCAACUGCCAAG
(((((((..(((.(((((...(((..........)))....))))).)))..)))))))..

Structure

--       GU   U     -GUU   auuu 
  UGGCAGU  GGU AGCUG    GUG    u
  |||||||  ||| |||||    |||     
  ACCGUCA  UCA UCGAC    cgc    u
GA       AC   C     Aacu   agau 

Annotation confidence Medium

Genome context

Sratti_scf00001_Chr00: 1349225-1349285 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from str-mir-34a

Mature str-miR-34a-5p

• Accession: MIMAT0033484
• Description: Strongyloides ratti str-miR-34a-5p mature miRNA
• Sequence: 1 - UGGCAGUGUGGUUAGCUGGUUGUG - 24
• Evidence: experimental ; Illumina [1]

Mature str-miR-34a-3p

• Accession: MIMAT0033485
• Description: Strongyloides ratti str-miR-34a-3p mature miRNA
• Sequence: 41 - ACAGCUCACUCAACUGCCAAG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260