Stem-loop str-mir-34b

Accession

MI0027177

Description

Strongyloides ratti str-mir-34b precursor miRNA

Sequence

227635 reads, 3797.0 reads per million, 12 experiments

UGGCAGUGUAGUUAGCUGGUUgauguuuuaaaaaucAACAGCUUACCAAAUUGCCAUC
(((((((...((.(((((.(((((.........)))))))))).))...)))))))..

Structure

--       GUA  U     G     guu 
  UGGCAGU   GU AGCUG UUgau   u
  |||||||   || ||||| |||||   u
  ACCGUUA   CA UCGAC AAcua   a
CU       AAC  U     -     aaa 

Annotation confidence High

Genome context

Sratti_scf00001_Chr00: 1349806-1349863 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from str-mir-34b

Mature str-miR-34b-5p

• Accession: MIMAT0033486
• Description: Strongyloides ratti str-miR-34b-5p mature miRNA
• Sequence: 1 - UGGCAGUGUAGUUAGCUGGUU - 21
• Evidence: experimental ; Illumina [1]

Mature str-miR-34b-3p

• Accession: MIMAT0033487
• Description: Strongyloides ratti str-miR-34b-3p mature miRNA
• Sequence: 37 - AACAGCUUACCAAAUUGCCAUC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260