Stem-loop str-mir-8400

Accession

MI0027181

Description

Strongyloides ratti str-mir-8400 precursor miRNA

Sequence

578 reads, 10.0 reads per million, 12 experiments

UGUGGGUUAAAUCAUCUAGAUUcauagauuaacauacgaUUCUAGGUAAUUUAAGCUACaaa
(((((.((((((.(((((((.((.((........)).)).))))))).)))))).)))))..

Structure

--     G      C       U  a  gau 
  UGUGG UUAAAU AUCUAGA Uc ua   u
  ||||| |||||| ||||||| || ||    
  aCAUC AAUUUA UGGAUCU ag au   a
aa     G      A       U  c  aca 

Annotation confidence Medium

Genome context

Sratti_scf00013_Chr00: 356724-356785 [+]

Mature str-miR-8400-5p

• Accession: MIMAT0033494
• Description: Strongyloides ratti str-miR-8400-5p mature miRNA
• Sequence: 1 - UGUGGGUUAAAUCAUCUAGAUU - 22
• Evidence: experimental ; Illumina [1]

Mature str-miR-8400-3p

• Accession: MIMAT0033495
• Description: Strongyloides ratti str-miR-8400-3p mature miRNA
• Sequence: 40 - UUCUAGGUAAUUUAAGCUAC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260