Stem-loop str-mir-34c

Accession

MI0027185

Description

Strongyloides ratti str-mir-34c precursor miRNA

Sequence

UGGCAGUGUGAUUAGCUGGUUGaagaagauuauaaauucaACAGCUCAUUAAACUGCCUCU
.((((((.((((.(((((.(((((............)))))))))).)))).))))))...

Structure

--U      G    U     G     gaaga 
   GGCAGU UGAU AGCUG UUGaa     u
   |||||| |||| ||||| |||||      
   CCGUCA AUUA UCGAC Aacuu     u
UCU      A    C     -     aaaua 

Annotation confidence Low

Genome context

Sratti_scf00001_Chr00: 1349605-1349665 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from str-mir-34c

Mature str-miR-34c-5p

• Accession: MIMAT0033502
• Description: Strongyloides ratti str-miR-34c-5p mature miRNA
• Sequence: 1 - UGGCAGUGUGAUUAGCUGGUUG - 22
• Evidence: experimental ; Illumina [1]

Mature str-miR-34c-3p

• Accession: MIMAT0033503
• Description: Strongyloides ratti str-miR-34c-3p mature miRNA
• Sequence: 41 - ACAGCUCAUUAAACUGCCUCU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23729632
   Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes
   "Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C"
   "Genome Biol Evol (2013) 5:1246-1260