Stem-loop sma-mir-8447

Accession

MI0027243

Description

Schistosoma mansoni sma-mir-8447 precursor miRNA

Literature search

1 open access papers mention sma-mir-8447
(1 sentences)

Sequence

1711 reads, 500.0 reads per million, 27 experiments

ugacugagugauagagagugauuggugCAAUAUGAUGAACACUAUCAGAUccaacuuugaguauggacaaugaugaguguguguauacGAGCUUUUUAACUCUGAUU
.....((((..((((((((.....(((((.........(((((((((..(((((((...))).))))...)))).))))).)))))....)))))))))))).....

Structure

ugacu    ga        gauug     AUAUGAUGA     -    -GA    -   u 
     gagu  uagagagu     gugCA         ACACU AUCA   Ucca acu  
     ||||  ||||||||     |||||         ||||| ||||   |||| ||| u
     CUCA  AUUUUUCG     uaugu         uguga uagu   aggu uga  
UUAGU    --        -AGca     --------g     g    aac    a   g 

Annotation confidence Low

Genome context

5: 12246927-12247033 [-]

Mature sma-miR-8447-5p

• Accession: MIMAT0033604
• Description: Schistosoma mansoni sma-miR-8447-5p mature miRNA
• Sequence: 28 - CAAUAUGAUGAACACUAUCAGAU - 50
• Evidence: experimental ; Illumina [1], SOLiD [1]

Mature sma-miR-8447-3p

• Accession: MIMAT0033605
• Description: Schistosoma mansoni sma-miR-8447-3p mature miRNA
• Sequence: 89 - GAGCUUUUUAACUCUGAUU - 107
• Evidence: experimental ; Illumina [1], SOLiD [1]

References

1. PubMed ID: 24069470
   Sex-biased expression of microRNAs in Schistosoma mansoni
   Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
   PLoS Negl Trop Dis (2013) 7:e2402