Stem-loop pxy-mir-8488

Accession

MI0027291

Description

Plutella xylostella pxy-mir-8488 precursor miRNA

Literature search

1 open access papers mention pxy-mir-8488
(1 sentences)

Sequence

220 reads, 92.0 reads per million, 25 experiments

aaaauguuagucuauggucaacAGCUGUCAGUUUCUUAGUAGAUAaguuuauaauucuaUCACUGGGAAACUGAUACUGGUugucuauggucuauaacuacaucau
...(((((((.((((((.((((((.(((((((((((((((.((((((((...)))).))))))))))))))))))))).)))).)))))).))).....))))...

Structure

aaa    -----   u      u    -  C               A    -    u 
   augu     uag cuaugg caac AG UGUCAGUUUCUUAGU GAUA aguu  
   ||||     ||| |||||| |||| || ||||||||||||||| |||| |||| a
   uaca     auc gguauc guUG UC AUAGUCAAAGGGUCA CUau uuaa  
uac    ucaau   u      u    G  -               -    c    u 

Annotation confidence High

Genome context

scaffold_83: 422117-422222 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pxy-mir-8488

Mature pxy-miR-8488-5p

• Accession: MIMAT0033695
• Description: Plutella xylostella pxy-miR-8488-5p mature miRNA
• Sequence: 23 - AGCUGUCAGUUUCUUAGUAGAUA - 45
• Evidence: experimental ; Illumina [1]

Mature pxy-miR-8488-3p

• Accession: MIMAT0058600
• Description: Plutella xylostella pxy-miR-8488-3p mature miRNA
• Sequence: 60 - UCACUGGGAAACUGAUACUGGU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24236051
   Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
   Liang P, Feng B, Zhou X, Gao X
   PLoS One (2013) 8:e78787