Stem-loop pxy-mir-8504

Accession

MI0027309

Description

Plutella xylostella pxy-mir-8504 precursor miRNA

Sequence

590 reads, 91.0 reads per million, 31 experiments

auacauguauacagggucuccgugcaaguauggauuuaaUGAAGGGGCUGACGAAGGGACUugucgguuucccaaaguugguggaaaacaguaccugaguuaacucauucauuCCAUCCAUACUUGUACGGGUauccuguauaccugacg
...((.(((((((((((.(((((((((((((((((..((((((.(((.((((..(((.(((.((...(((((((....))).)))).))))).)))..)))).))).))))))..))))))))))))))))).))))))))))).))...

Structure

aua  u           c                 uu      G   C    GA   G   u  cgg    -   a 
   ca guauacagggu uccgugcaaguauggau  aaUGAA GGG UGAC  AGG ACU gu   uuuc cca a
   || ||||||||||| |||||||||||||||||  |||||| ||| ||||  ||| ||| ||   |||| |||  
   gu cauauguccua GGGCAUGUUCAUACCUA  uuacuu cuc auug  ucc uga ca   aagg ggu g
gca  c           U                 CC      a   a    ag   a   -  --a    u   u 

Annotation confidence Low

Genome context

scaffold_98: 791835-791984 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pxy-mir-8504

Mature pxy-miR-8504-5p

• Accession: MIMAT0058601
• Description: Plutella xylostella pxy-miR-8504-5p mature miRNA
• Sequence: 40 - UGAAGGGGCUGACGAAGGGACU - 61
• Evidence: experimental ; Illumina [1]

Mature pxy-miR-8504-3p

• Accession: MIMAT0033716
• Description: Plutella xylostella pxy-miR-8504-3p mature miRNA
• Sequence: 114 - CCAUCCAUACUUGUACGGGU - 133
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24236051
   Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
   Liang P, Feng B, Zhou X, Gao X
   PLoS One (2013) 8:e78787