Stem-loop pxy-mir-965

Accession

MI0027311

Description

Plutella xylostella pxy-mir-965 precursor miRNA

Literature search

2 open access papers mention pxy-mir-965
(2 sentences)

Sequence

971 reads, 304.0 reads per million, 29 experiments

aucagcuguauuacugaGGGAGAAGUUAUAUCGCUGUAUGuauuaugugcacuaucaUAAGCGUAUAGCUUUUCCCCUUagugguacagcuauc
...(((((((((((((((((((((((((((.((((((((((((...))))).)))....)))))))))))))).)))))))))))))))))...

Structure

auc                 -          U    ----   -     u 
   agcuguauuacugaGGG AGAAGUUAUA CGCU    GUA UGuau  
   ||||||||||||||||| |||||||||| ||||    ||| ||||| a
   ucgacauggugaUUCCC UUUUCGAUAU GCGA    uau acgug  
cua                 C          -    AUac   c     u 

Annotation confidence High

Genome context

scaffold_30: 133868-133961 [-]

Mature pxy-miR-965-5p

• Accession: MIMAT0033719
• Description: Plutella xylostella pxy-miR-965-5p mature miRNA
• Sequence: 18 - GGGAGAAGUUAUAUCGCUGUAUG - 40
• Evidence: experimental ; Illumina [1]

Mature pxy-miR-965-3p

• Accession: MIMAT0058602
• Description: Plutella xylostella pxy-miR-965-3p mature miRNA
• Sequence: 58 - UAAGCGUAUAGCUUUUCCCCUU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24236051
   Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
   Liang P, Feng B, Zhou X, Gao X
   PLoS One (2013) 8:e78787