miRBase entry: pxy-mir-8509

Stem-loop pxy-mir-8509


Accession
MI0027322
Description
Plutella xylostella pxy-mir-8509 precursor miRNA


Sequence

6936 reads, 349.0 reads per million, 30 experiments
caagccaaaacucccggaucgguuUAUAAAUCCUCUUUUGCACUGAaugggcaugcucAGUGGAAAAGAGGAUCUGUAGaucgauccggguaugcgcaac
...((((.....((((((((((((((((.((((((((((.((((((..........)))))).)))))))))).))))))))))))))))..)).))...

Structure
caa  -  aaacu                A          G      augg 
   gc ca     cccggaucgguuUAUA AUCCUCUUUU CACUGA    g
   || ||     |||||||||||||||| |||||||||| ||||||     
   cg gu     gggccuagcuaGAUGU UAGGAGAAAA GUGAcu    c
caa  c  ---au                C          G      cgua 


Annotation confidence High
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Genome context
scaffold_89: 839301-839400 [-]

Database links

Mature pxy-miR-8509-5p

Accession MIMAT0033731
Description Plutella xylostella pxy-miR-8509-5p mature miRNA
Sequence 25 - UAUAAAUCCUCUUUUGCACUGA - 46
Evidence experimental
Illumina [1]

Mature pxy-miR-8509-3p

Accession MIMAT0058605
Description Plutella xylostella pxy-miR-8509-3p mature miRNA
Sequence 59 - AGUGGAAAAGAGGAUCUGUAG - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24236051
    Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
    Liang P, Feng B, Zhou X, Gao X
    PLoS One (2013) 8:e78787