Accession
MI0027331
Description
Plutella xylostella
pxy-mir-8515-1 precursor miRNA
Sequence
250
reads,
235.0
reads per million, 27 experiments
ccagcgaguagccaucgcgccccgacccccgccgccgcgccgccaccgcgcgcguuccccuaucucccugUCGUUGCAUUCAUUCCAUUAccggccgcggcgugcagguucuuaugcggccggUAAUGGAAUGAAUGCAACGACAGGaagggagggcaacgcgcgcgguggcggcgcggcggcggcgcgguggcgggcuucgcgcgacucguaucuacagug
...((((((.((...((.(((((.((((((((((((((((((((((((((((((((.((((.(((.(((((((((((((((((((((((((((((((((((......)).....))))))))))))))))))))))))))))))))).))).)))).)))))))))))))))))))))))))))).).))).).))))..)).)).))))))..........
...((((((.((...((.(((((.((((((((((((((((((((((((((((((((.((((.(((.(((((((((((((((((((((((((((((((((((......)).....))))))))))))))))))))))))))))))))).))).)))).)))))))))))))))))))))))))))).).))).).))))..)).)).))))))..........
Structure
-------cca a cau -c - g - - c a c ----- gu
gcgagu gc cg gccc c acc c ccgccgccgcgccgccaccgcgcgcguu cccu ucu ccugUCGUUGCAUUCAUUCCAUUAccggccgcg gc g
|||||| || || |||| | ||| | |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| ||
ugcuca cg gc cggg g ugg g ggcggcggcgcggcgguggcgcgcgcaa ggga gga GGACAGCAACGUAAGUAAGGUAAUggccggcgu ug c
gugacaucua g --c uu c g c c c g a auucu ga
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
scaffold_6: 1578444-1578665 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pxy-mir-8515-1
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature pxy-miR-8515-1-5p
| Accession | MIMAT0058608 |
| Description | Plutella xylostella pxy-miR-8515-1-5p mature miRNA |
| Sequence | 71 - UCGUUGCAUUCAUUCCAUUA - 90 |
| Evidence |
experimental
Illumina [1] |
Mature pxy-miR-8515-3p
| Accession | MIMAT0033742 |
| Description | Plutella xylostella pxy-miR-8515-3p mature miRNA |
| Sequence | 124 - UAAUGGAAUGAAUGCAACGACAGG - 147 |
| Evidence |
experimental
Illumina [1] |
References
|
