Stem-loop pxy-mir-8517a

Accession

MI0027332

Description

Plutella xylostella pxy-mir-8517a precursor miRNA

Literature search

1 open access papers mention pxy-mir-8517a
(1 sentences)

Sequence

460 reads, 751.0 reads per million, 29 experiments

ccauauagucuagcccccuuauucauaaaauaguuaguggagacuuaagcUAUUGAACUGUUCUGUCACUCUUUGacagagaacaauuuguucuuUGACAGAGAGGGACAAAACAGUUgaauagcuaaagcguccauuaacuuuuuuaugaauaaggggguuagucuauacau
...(((((.(((((((((((((((((((((.((((((((((..(((.(((((((.(((((((.((((.(((((((.(((((((((...))))))))).))))))).)))).))))))).))))))).)))..)))))))))).))))))))))))))))))))).)))))...

Structure

cca     u                     u          ga   a       G       C    A       a         a 
   uauag cuagcccccuuauucauaaaa aguuagugga  cuu agcUAUU AACUGUU UGUC CUCUUUG cagagaaca  
   ||||| ||||||||||||||||||||| ||||||||||  ||| ||||||| ||||||| |||| ||||||| ||||||||| u
   auauc gauugggggaauaaguauuuu ucaauuaccu  gaa ucgauaa UUGACAA ACAG GAGAGAC GUuucuugu  
uac     u                     u          gc   a       g       A    G       A         u 

Annotation confidence Low

Genome context

scaffold_244: 75865-76037 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pxy-mir-8517a

Mature pxy-miR-8517a-5p

• Accession: MIMAT0033743
• Description: Plutella xylostella pxy-miR-8517a-5p mature miRNA
• Sequence: 51 - UAUUGAACUGUUCUGUCACUCUUUG - 75
• Evidence: experimental ; Illumina [1]

Mature pxy-miR-8517a-3p

• Accession: MIMAT0058610
• Description: Plutella xylostella pxy-miR-8517a-3p mature miRNA
• Sequence: 96 - UGACAGAGAGGGACAAAACAGUU - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24236051
   Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
   Liang P, Feng B, Zhou X, Gao X
   PLoS One (2013) 8:e78787