Stem-loop pxy-mir-8515-2

Accession

MI0027338

Description

Plutella xylostella pxy-mir-8515-2 precursor miRNA

Sequence

43 reads, 2939 reads per million, 4 experiments

cgagucgcgcgaagcccgccaccgcgccgccgccgcgccgccaccgcgcgcguugcccucccuuccugucguugcauucauuccauuaccggccgcauaagaaccugcacgccgCGGCCGGUAAUGGAAUGAAUGCaacgacagggagauaggggaacgcgcgcgguggcggcgcggcggcgggggucggggcgcgauggc
...(((((((....((((..(((.(.((((((((((((((((((((((((((((.((((..(((((((((((((((((((((((((((((((((((.................)))))))))))))))))))))))))))))))))))..)))).)))))))))))))))))))))))))))))))))))))))))))...

Structure

cga       gaag    cc   g g                            g    cc                                   auaagaa 
   gucgcgc    cccg  acc c ccgccgccgcgccgccaccgcgcgcguu cccu  cuuccugucguugcauucauuccauuaccggccgc       c
   |||||||    ||||  ||| | |||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||       c
   uagcgcg    gggc  ugg g ggcggcggcgcggcgguggcgcgcgcaa ggga  gagggacagcaaCGUAAGUAAGGUAAUGGCCGGCg       u
cgg       ----    --   - -                            g    ua                                   ccgcacg 

Annotation confidence Not enough data

Genome context

scaffold_6: 1578455-1578655 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pxy-mir-8515-2

Mature pxy-miR-8515

• Accession: MIMAT0033742
• Description: Plutella xylostella pxy-miR-8515 mature miRNA
• Sequence: 115 - CGGCCGGUAAUGGAAUGAAUGC - 136
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24236051
   Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
   Liang P, Feng B, Zhou X, Gao X
   PLoS One (2013) 8:e78787