Dead hairpin entry

Stem-loop pxy-mir-6497

Accession

MI0027355

Description

Plutella xylostella pxy-mir-6497 precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

0 open access papers mention pxy-mir-6497
(0 sentences)

Sequence

16832966 reads, 770357.0 reads per million, 31 experiments

cuucggaauaaggauuggcucugaggaccggggcgugucGGGUUUGGAGGGGAAGCGGAUgcggccggugccgggccuggucgaugcccguucacgcgggCGGACUCUGGGCCCGCGCUCCGGCguuccgcggauccuccuagccguaaggccgugucgguuucgucucgugc
(((((((............)))))))(((((.(((.(((.((((.((((((...(((((.(((.((((.(((((((((((....(((((((....)))))))....))))))))).)).))))))))))))...)))))).))))....)))))).)))))............

Structure

cuucggaauaaggauuggcucugagg     g   u   ---G    U      GAA     U   g    u  -         ucga       u 
                          accgg gcg guc    GGUU GGAGGG   GCGGA gcg ccgg gc cgggccugg    ugcccgu c
                          ||||| ||| |||    |||| ||||||   ||||| ||| |||| || |||||||||    |||||||  
                          uggcu ugc cgg    ccga ccuccu   cgccu ugC GGCC CG GCCCGGGUC    GCgggcg a
--------------cgugcucugcuu     g   -   aaug    u      agg     -   -    U  C         UCAG       c