Stem-loop pxy-mir-9b-1

Accession

MI0027403

Description

Plutella xylostella pxy-mir-9b-1 precursor miRNA

Literature search

1 open access papers mention pxy-mir-9b-1
(1 sentences)

Sequence

372181 reads, 18180.0 reads per million, 31 experiments

ugaagcugcaugggcgcggcucggcUCUUUGGUAUCCUAGCUGUAGGcguuuacgaagcggccUAAAGUUAUGGUACCGAAGUCCcgggccucgccauucgcuacg
...(((.(.(..((((.(((((((..((((((((((.(((((.(((((((((...)))).))))).))))).))))))))))..))))))).))))..)))))...

Structure

uga   u c ug    c       cU          C     G     -    a 
   agc g a  ggcg ggcucgg  CUUUGGUAUC UAGCU UAGGc guuu  
   ||| | |  |||| |||||||  |||||||||| ||||| ||||| |||| c
   ucg c u  ccgc ccgggcC  GAAGCCAUGG AUUGA AUccg cgaa  
gca   - - ua    u       CU          U     A     g    g 

Annotation confidence High

Genome context

scaffold_287: 26021-26126 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pxy-mir-9b-1

Mature pxy-miR-9b-5p

• Accession: MIMAT0033807
• Description: Plutella xylostella pxy-miR-9b-5p mature miRNA
• Sequence: 26 - UCUUUGGUAUCCUAGCUGUAGG - 47
• Evidence: experimental ; Illumina [1]

Mature pxy-miR-9b-3p

• Accession: MIMAT0033808
• Description: Plutella xylostella pxy-miR-9b-3p mature miRNA
• Sequence: 64 - UAAAGUUAUGGUACCGAAGUCC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24236051
   Identification and developmental profiling of microRNAs in diamondback moth, Plutellaxylostella (L.)
   Liang P, Feng B, Zhou X, Gao X
   PLoS One (2013) 8:e78787