Accession
MI0027425
Description
Amborella trichopoda
atr-MIR8551 precursor miRNA
Sequence
598
reads,
507.0
reads per million, 2 experiments
gggucuagucaucuuccggaaaguauuccuagguuugaagggaguuuaauaggucaaaauGAGUCCAAGAGCCGACCUAGAACAUccaaaaaguucuagaacacuuuugaaauuuccggaacaacuuuuaugacuuggaaacuguuaacgacacugucauaaaauuuuucagaaaauuuuggaauguuuuggggcuuuccagaaauuaaugggAUGUUCUAGGUUAGCUCUUGGAuguguuuugccccgcuaaacccuuucuagccuuagaauauucuuuagaagauacauggaccu
(((((((((.((((((.(((.(((((((..(((((.((((((.(((((...((.((((((..((((((((((.((((((((((((((..((((((((((((((.(((((((((((.(.(((.((.(((((((((.((..............))..))))))))))).))).).))))))))))))))))))))))))).((........)))))))))))))))).))))))))))..)))))).))...))))))))))).)))))..))))))).))).)))))))).)))))))
(((((((((.((((((.(((.(((((((..(((((.((((((.(((((...((.((((((..((((((((((.((((((((((((((..((((((((((((((.(((((((((((.(.(((.((.(((((((((.((..............))..))))))))))).))).).))))))))))))))))))))))))).((........)))))))))))))))).))))))))))..)))))).))...))))))))))).)))))..))))))).))).)))))))).)))))))
Structure
- c c a cu u a aua u GA C -----------aa c c g c c -u gaaacu
gggucua gu aucuuc gga aguauuc agguu gaaggg guuua gg caaaau GUCCAAGAGC GACCUAGAACAUcc aaaguucuagaaca uuuugaaauuu c gaa aa uuuuaugac ug g
||||||| || |||||| ||| ||||||| ||||| |||||| ||||| || |||||| |||||||||| |||||||||||||| |||||||||||||| ||||||||||| | ||| || ||||||||| ||
uccaggu ca uagaag uuu uuauaag uccga cuuucc caaau cc guuuug uAGGUUCUCG UUGGAUCUUGUAgg uuucgggguuuugu aagguuuuaaa g cuu uu aaaauacug ac u
a - a c au u - cgc c ug A guaauuaaagacc - a a u - uc agcaau
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
scaffold00002: 4164864-4165160 [+]
Database links
Mature atr-miR8551-5p
| Accession | MIMAT0061209 |
| Description | Amborella trichopoda atr-miR8551-5p mature miRNA |
| Sequence | 61 - GAGUCCAAGAGCCGACCUAGAACAU - 85 |
| Evidence |
experimental
unknown |
Mature atr-miR8551-3p
| Accession | MIMAT0033822 |
| Description | Amborella trichopoda atr-miR8551-3p mature miRNA |
| Sequence | 214 - AUGUUCUAGGUUAGCUCUUGGA - 235 |
| Evidence |
experimental
Illumina [1] |
References
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