miRBase entry: atr-MIR8551

Stem-loop atr-MIR8551


Accession
MI0027425
Description
Amborella trichopoda atr-MIR8551 precursor miRNA


Sequence

569 reads, 509 reads per million, 4 experiments
gggucuagucaucuuccggaaaguauuccuagguuugaagggaguuuaauaggucaaaaugaguccaagagccgaccuagaacauccaaaaaguucuagaacacuuuugaaauuuccggaacaacuuuuaugacuuggaaacuguuaacgacacugucauaaaauuuuucagaaaauuuuggaauguuuuggggcuuuccagaaauuaaugggAUGUUCUAGGUUAGCUCUUGGAUGuguuuugccccgcuaaacccuuucuagccuuagaauauucuuuagaagauacauggaccu
(((((((((.((((((.(((.(((((((..(((((.((((((.(((((...((.((((((..((((((((((.((((((((((((((..((((((((((((((.(((((((((((.(.(((.((.(((((((((.((..............))..))))))))))).))).).))))))))))))))))))))))))).((........)))))))))))))))).))))))))))..)))))).))...))))))))))).)))))..))))))).))).)))))))).)))))))

Structure
       -  c      c   a       cu     u      a     aua  u      ga          c              -----------aa              c           c g   c  c         -u  gaaacu 
gggucua gu aucuuc gga aguauuc  agguu gaaggg guuua   gg caaaau  guccaagagc gaccuagaacaucc             aaaguucuagaaca uuuugaaauuu c gaa aa uuuuaugac  ug      g
||||||| || |||||| ||| |||||||  ||||| |||||| |||||   || ||||||  |||||||||| ||||||||||||||             |||||||||||||| ||||||||||| | ||| || |||||||||  ||       
uccaggu ca uagaag uuu uuauaag  uccga cuuucc caaau   cc guuuug  UAGGUUCUCG UUGGAUCUUGUAgg             uuucgggguuuugu aagguuuuaaa g cuu uu aaaauacug  ac      u
       a  -      a   c       au     u      -     cgc  c      uG          A              guaauuaaagacc              -           a a   u  -         uc  agcaau 


Annotation confidence High
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Genome context
scaffold00002: 4164864-4165160 [+]

Database links

Mature atr-miR8551

Accession MIMAT0033822
Description Amborella trichopoda atr-miR8551 mature miRNA
Sequence 214 - AUGUUCUAGGUUAGCUCUUGGAUG - 237
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089