Stem-loop atr-MIR8553a

Accession

MI0027427

Description

Amborella trichopoda atr-MIR8553a precursor miRNA

Sequence

1130 reads, 752 reads per million, 4 experiments

auguauguguauguguauauauauauggaaaaagauuuccuaagcuacuagcuauaaugaauaguauaagcuacuagcucuuugcugucaaaucuucAUCGGGUGGUUCAGAAUUCAUAUCacuaucugaauuuuaauauuuuuucuagaaaucagaucguaaugaaaguuuggauguguguauuaaacaauagggcgcacaauaaaaaaauauuuccuaaaauauaaacugauugaaauacccugaaaaauaauggggguaauuuggucauuuuaaauuauuggaaguaauuguuuuauauuuuuauacggugcgcaauaguguuagguauauacacucaaaauuucaucuuaauuugauuuauagaaaaaacauuaaaauuaaaauagugauaugaauuuugaaccacgcgaugaagaucugacgguugggaacuaguagcuuauauuauucauuauagcuaguagcuuagaaaaucuuuuuccuauauauauauauauauauauauauau
((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((.((((.(((((((.((((((((((.((((((((((((((((((((((((...(((((((((.(((((((((.(((((((((....((((((.(((((.((((((((((.((((.((..((((((..((.((((((((((((...(((.((((.((((((((.((((((.(.......).)))))).)))))))).)))).)))...))))...........)))))))).))..))))))..)).)))).)))))))))).))))).))))))....))))))))).))))))))).)))))))))...)))))))))))))))))))))))).)))))))))).))))))).)))).)))))))))))))))))))))))))))))))))))))).)))))))))))).))))))))))))))))))))))))))

Structure

                          -            c                                      c    u       a          G                        cug         a         g         cgua      g     a          a    a  gg      aa  a        -----------    uaa   a    c        a      g aa 
auguauguguauguguauauauauau ggaaaaagauuu cuaagcuacuagcuauaaugaauaguauaagcuacuag ucuu gcuguca aucuucAUCG GUGGUUCAGAAUUCAUAUCacuau   aauuuuaau uuuuuucua aaaucagau    augaaa uuugg uguguguauu aaca ua  gcgcac  ua aaaaauau           uucc   aau uaaa ugauugaa uacccu a  a
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||||||||||||||||||||||   ||||||||| ||||||||| |||||||||    |||||| ||||| |||||||||| |||| ||  ||||||  || ||||||||           ||||   ||| |||| |||||||| |||||| |  a
uauauauauauauauauauauauaua ccuuuuucuaaa gauucgaugaucgauauuacuuauuauauucgaugauc aggg uggcagu uagaaguagc caccaaguuuuaaguauagugaua   uuaaaauua aaaaaagau uuuaguuua    uacuuu aaacu acauauaugg uugu au  cgcgug  au uuuuuaua           aagg   uua auuu acugguuu augggg u  u
                          u            a                                      a    u       c          g                        aaa         c         a         auuc      a     c          a    g  aa      gc  a        uuuuguuaaug    uua   a    u        a      g aa 

Annotation confidence High

Genome context

scaffold00008: 2573268-2573780 [+]

Mature atr-miR8553a

• Accession: MIMAT0033824
• Description: Amborella trichopoda atr-miR8553a mature miRNA
• Sequence: 98 - AUCGGGUGGUUCAGAAUUCAUAUC - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089