miRBase entry: atr-MIR8553a

Stem-loop atr-MIR8553a


Accession
MI0027427
Description
Amborella trichopoda atr-MIR8553a precursor miRNA


Sequence

1290 reads, 1091.0 reads per million, 2 experiments
auguauguguauguguauauauauauggaaaaagauuuccuaagcuacuagcuauaaugaauaguauaagcuacuagcucuuugcugucaaaucuucAUCGGGUGGUUCAGAAUUCAUAUCAcuaucugaauuuuaauauuuuuucuagaaaucagaucguaaugaaaguuuggauguguguauuaaacaauagggcgcacaauaaaaaaauauuuccuaaaauauaaacugauugaaauacccugaaaaauaauggggguaauuuggucauuuuaaauuauuggaaguaauuguuuuauauuuuuauacggugcgcaauaguguuagguauauacacucaaaauuucaucuuaauuugauuuauagaaaaaacauuaaaauuaaaauagugauaugaauuuUGAACCACGCGAUGAAGAUCUGACgguugggaacuaguagcuuauauuauucauuauagcuaguagcuuagaaaaucuuuuuccuauauauauauauauauauauauauau
((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((.((((.(((((((.((((((((((.((((((((((((((((((((((((...(((((((((.(((((((((.(((((((((....((((((.(((((.((((((((((.((((.((..((((((..((.((((((((((((...(((.((((.((((((((.((((((.(.......).)))))).)))))))).)))).)))...))))...........)))))))).))..))))))..)).)))).)))))))))).))))).))))))....))))))))).))))))))).)))))))))...)))))))))))))))))))))))).)))))))))).))))))).)))).)))))))))))))))))))))))))))))))))))))).)))))))))))).))))))))))))))))))))))))))

Structure
                          -            c                                      c    u       a          G                        cug         a         g         cgua      g     a          a    a  gg      aa  a        -----------    uaa   a    c        a      g aa 
auguauguguauguguauauauauau ggaaaaagauuu cuaagcuacuagcuauaaugaauaguauaagcuacuag ucuu gcuguca aucuucAUCG GUGGUUCAGAAUUCAUAUCAcuau   aauuuuaau uuuuuucua aaaucagau    augaaa uuugg uguguguauu aaca ua  gcgcac  ua aaaaauau           uucc   aau uaaa ugauugaa uacccu a  a
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||||||||||||||||||||||   ||||||||| ||||||||| |||||||||    |||||| ||||| |||||||||| |||| ||  ||||||  || ||||||||           ||||   ||| |||| |||||||| |||||| |  a
uauauauauauauauauauauauaua ccuuuuucuaaa gauucgaugaucgauauuacuuauuauauucgaugauc aggg uggCAGU UAGAAGUAGC CACCAAGUuuuaaguauagugaua   uuaaaauua aaaaaagau uuuaguuua    uacuuu aaacu acauauaugg uugu au  cgcgug  au uuuuuaua           aagg   uua auuu acugguuu augggg u  u
                          u            a                                      a    u       C          G                        aaa         c         a         auuc      a     c          a    g  aa      gc  a        uuuuguuaaug    uua   a    u        a      g aa 


Annotation confidence Low
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Genome context
scaffold00008: 2573268-2573780 [+]

Database links

Mature atr-miR8553a-5p

Accession MIMAT0033824
Description Amborella trichopoda atr-miR8553a-5p mature miRNA
Sequence 98 - AUCGGGUGGUUCAGAAUUCAUAUCA - 122
Evidence experimental
Illumina [1]

Mature atr-miR8553a-3p

Accession MIMAT0061210
Description Amborella trichopoda atr-miR8553a-3p mature miRNA
Sequence 403 - UGAACCACGCGAUGAAGAUCUGAC - 426
Evidence experimental
unknown

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089