miRBase entry: atr-MIR8553b

Stem-loop atr-MIR8553b


Accession
MI0027431
Description
Amborella trichopoda atr-MIR8553b precursor miRNA


Sequence

1029 reads, 916.0 reads per million, 2 experiments
caccuauaaugauuaguaauauagguggaaucccagccguccgaucuuuaucgggugguucaaaauacauguaacuauaugaauuuuaaucauuuauuuagaaaucagauugaaaugaaaUUUUGGGUGUAUAUACUUAACACccuugugcaucauauaaaaauauaaaaaaauacuuuucagaauuaaaaauuaccaaauuacccccaucauuugucagggauauauauuuuggaagauauuauucuauauuauuucuuguauuaccuauuuuuaguacacaugcucaaaauuucaucacgaucagauuucuaaaaaaaagauuaaaguucugauagugauaUGUAUUUUGGACCACCUGAUGAAGaucagacugcugggauuccaccuauauuauuauucauauaggug
((((((((.(((.((((((((((((((((((((((((.(((.((((((((((((((((((((((((((((((.(((((..(((((((((((.(((.((((((((((.(((((..((((((((((((((((...((((..........(((((....(((...(((((.((.((((.((((((((((.................(((.((.....))...)))......)))))))))).)))).)).))))))))....)))))...........))))...))))))))))))))))..))))).)))))))))).))).)))))))))))..))))).)))))))))))))))))))))))))))))).))).)))))))))))))))))))))))).)))))))))))

Structure
        a   u                        c   c                              a     au           a   a          a     aa                AUA    -UAACACccuu     ucau   aaa     a  a    c          uaaaaauuaccaaauua   --c  u 
caccuaua uga uaguaauauagguggaaucccagc guc gaucuuuaucgggugguucaaaauacaugu acuau  gaauuuuaauc uuu uuuagaaauc gauug  augaaaUUUUGGGUGU   UACU           gugca    aua   auaua aa aaua uuuucagaau                 ccc   ca c
|||||||| ||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||  ||||||||||| ||| |||||||||| |||||  ||||||||||||||||   ||||           |||||    |||   ||||| || |||| ||||||||||                 |||   || a
guggauau acu auuauuauauccaccuuagggucg cag cuaGAAGUAGUCCACCAGGUUUUAUGUaua ugaua  cuugaaauuag aaa aaaucuuuag cuagc  uacuuuaaaacucgua   auga           uaugu    uau   uauau uu uuau gaagguuuua                 ggg   gu u
        -   u                        u   a                              g     gu           a   a          a     ac                cac    uuuuuauccau     ucuu   ---     c  a    a          -----------uauaua   acu  u 


Annotation confidence Low
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Genome context
scaffold00013: 3157565-3157975 [-]

Database links

Mature atr-miR8553b-5p

Accession MIMAT0058634
Description Amborella trichopoda atr-miR8553b-5p mature miRNA
Sequence 121 - UUUUGGGUGUAUAUACUUAACAC - 143
Evidence experimental
unknown

Mature atr-miR8553b-3p

Accession MIMAT0033828
Description Amborella trichopoda atr-miR8553b-3p mature miRNA
Sequence 344 - UGUAUUUUGGACCACCUGAUGAAG - 367
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089