Stem-loop atr-MIR8559

Accession

MI0027434

Description

Amborella trichopoda atr-MIR8559 precursor miRNA

Sequence

676 reads, 702.0 reads per million, 2 experiments

uauauauauauauauaugggaauggauccuaucagcccacgggcgaacugcuacagugucaaccaacgguccagauuaaaucugggccgaucUGAGGUCGUGACCAUUGGAUCGGacccauauucaauuugggccuuuggcUGACACUGUAGUAGUCAACCcgugggcaaacaggcuucuuuccuucuauauauauauaua
..((((((((((((((.(((((.(((.(((....(((((((((...(((((((((((((((.((((.((((((((((.(((.((((((((((((((((....))).))))))))).)))).))).)))))))))).)))).)))))))))))))))...)))))))))....))).))).)))))..))))))))))))))

Structure

ua              -u     u   u   auca         cga               a    c          a   c    -         -   C 
  uauauauauauaua  gggaa gga ccu    gcccacggg   acugcuacaguguca ccaa gguccagauu aau uggg ccgaucUGA GGU G
  ||||||||||||||  ||||| ||| |||    |||||||||   ||||||||||||||| |||| |||||||||| ||| |||| ||||||||| |||  
  auauauauauauau  uccuu cuu gga    cgggugcCC   UGAUGAUGUCACAGU gguu ccggguuuaa uua accc GGCUAGGUU CCA U
--              cu     u   c   caaa         AAC               c    u          c   u    a         A   G 

Annotation confidence Low

Genome context

scaffold00017: 4559611-4559811 [-]

Mature atr-miR8559-5p

• Accession: MIMAT0061211
• Description: Amborella trichopoda atr-miR8559-5p mature miRNA
• Sequence: 93 - UGAGGUCGUGACCAUUGGAUCGG - 115
• Evidence: experimental ; unknown

Mature atr-miR8559-3p

• Accession: MIMAT0033831
• Description: Amborella trichopoda atr-miR8559-3p mature miRNA
• Sequence: 142 - UGACACUGUAGUAGUCAACC - 161
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089