Stem-loop atr-MIR8560

Accession

MI0027436

Description

Amborella trichopoda atr-MIR8560 precursor miRNA

Sequence

452 reads, 609.0 reads per million, 2 experiments

ucgcuagguugcugaguccaauaugccuugaaucaugaagccgaacugguauauaggccagguuacauagaUCCACUUUAAACACUCAGCCUgcgcuaauucaccuaguaaggauuucccuccaaaacacgaagacaacaaagaaaaauacaaguuagauaccaguucagcuucguguuucggaggaaauccuuacuaggUGAAUUAGUGCAGGCUGAGAguuuaaaguggaucuauguaaucugguuuuuuuuuuuuucuucaguuaaagagguuuugcugcuuggaagaguugugugg
.((((((.((.((((((.(((...(((((......(((((..(((.........(((((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((.(((.((((((((((..(((.........................)))...)))))))))).)))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))))))).....)))..)))))......))))).)))..))))))..)).))).))).

Structure

u   -   g  -g      -c   uau     gaauca     cc   cugguauau                             A                                   c   a          -ac   aaagaaaaaua 
 cgc uag uu  cugagu  caa   gccuu      ugaag  gaa         aggccagguuacauagaUCCACUUUAAAC CUCAGCCUgcgcuaauucaccuaguaaggauuucc ucc aaacacgaag   aac           c
 ||| ||| ||  ||||||  |||   |||||      |||||  |||         ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||   |||           a
 gug guu ag  gguucg  guu   uggag      acuuc  uuu         uuuggucuaauguaucuaggugaaauuug GAGUCGGACGUGAUUAAGUggaucauuccuaaagg agg uuugugcuuc   uug           a
g   u   g  aa      uc   --u     aaauug     uu   ----uuuuu                             A                                   -   c          gac   accauagauug 

Annotation confidence Low

Genome context

scaffold00002: 6347799-6348098 [-]

Mature atr-miR8560-5p

• Accession: MIMAT0033833
• Description: Amborella trichopoda atr-miR8560-5p mature miRNA
• Sequence: 72 - UCCACUUUAAACACUCAGCCU - 92
• Evidence: experimental ; Illumina [1]

Mature atr-miR8560-3p

• Accession: MIMAT0058637
• Description: Amborella trichopoda atr-miR8560-3p mature miRNA
• Sequence: 201 - UGAAUUAGUGCAGGCUGAGA - 220
• Evidence: experimental ; unknown

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089