miRBase entry: atr-MIR8562a

Stem-loop atr-MIR8562a


Accession
MI0027438
Description
Amborella trichopoda atr-MIR8562a precursor miRNA


Sequence

4524 reads, 3798.0 reads per million, 2 experiments
ccuauaggcgaaaaugaacacugauuucgccuacccucaucaccguccaaaguucaucgcacggucacaauuguuugguaguguuucauuuuuaauuuuuuuuuuuuacaaaUCGGAAUGAUCUGAAAUUUGGAGCauguauucauuaaaaauaagcaaaacuaggaaaaauauaaaaaaaaaaaauuacaugaaauaaauugaccaaaauaccaucgaaaagucucaaggguauuuuggucaauuuuguuuucgugaauuauuuguuuuauauuuucauuaggugcgucUCACUAAGAUGUACACACguuccaaauuuuagaucauuccgauucguagaaaaaaaaaugaaaaaugaaacauuaccgaacaaucgugaccgugcgaugaaauauagacggugaugagggcaagcgaaaucacuguucauuuucuccuauagg
((((((((.(((((((((((.(((((((((...((((((((((((((.....((((((((((((((((.((((((((((((((((((((((((...(((((((((((((.((((((((((((((((((((((((((.(((.....................((((..(((((((((((..(((.((((.(((((((.(((((((((((((((((...((......))...)))))))))))))))))...))))))))))).))).)))))))))))..))))((((((((.....))))))))))).)))))))))))))))))))))))))).)))))))))))))..)))))))))))))))))))))))).)))))))))))))))).....))))))))))))))...))))))))).))))))))))).))))))))

Structure
        c           c         cua              caaag                a                        aau             a                          a   auucauuaaaaauaagcaaaacuaggaaaaauauaaaaaaaaaaaauuacaugaaauaaauugaccaaaauaccaucgaaaagucucaaggguauuuuggucaauuuuguuuucgugaauuauuuguuuuauauuuucauuag        C 
ccuauagg gaaaaugaaca ugauuucgc   cccucaucaccguc     uucaucgcacggucac auuguuugguaguguuucauuuuu   uuuuuuuuuuuac aaUCGGAAUGAUCUGAAAUUUGGAGC ugu                                                                                                                                               gugcgucU A
|||||||| ||||||||||| |||||||||   ||||||||||||||     |||||||||||||||| ||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||| |||                                                                                                                                               |||||||| C
ggauaucc cuuuuacuugu acuaaagcg   gggaguaguggcag     aaguagcgugccagug uaacaagccauuacaaaguaaaaa   aaaaaaaaagaug uuagccuuacuagauuuuaaaccuug ACA                                                                                                                                               CAUGUAGA U
        u           c         aac              auaua                c                        -gu             c                          C   -----------------------------------------------------------------------------------------------------------------------------------------------        A 


Annotation confidence Low
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Genome context
scaffold00020: 3302096-3302538 [+]

Database links

Mature atr-miR8562a-5p

Accession MIMAT0033836
Description Amborella trichopoda atr-miR8562a-5p mature miRNA
Sequence 113 - UCGGAAUGAUCUGAAAUUUGGAGC - 136
Evidence experimental
Illumina [1]

Mature atr-miR8562a-3p

Accession MIMAT0058638
Description Amborella trichopoda atr-miR8562a-3p mature miRNA
Sequence 291 - UCACUAAGAUGUACACAC - 308
Evidence experimental
unknown

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089