miRBase entry: atr-MIR8562b

Stem-loop atr-MIR8562b


Accession
MI0027439
Description
Amborella trichopoda atr-MIR8562b precursor miRNA


Sequence

5889 reads, 9355 reads per million, 4 experiments
aacgccuauagguaaaaaagaacagugauuucgccuacccucaucaccguccaaagaucaucgcauggucacgauugucugauaguguuucauuuuuuauuuuuucuacaaaUCGGAAUGAUCUGAAAUUUGGAGCguauguucauaaaaaauagggaaucuacgaaaaauaucaaaaaaauauuuuacaugaaauaaauugaccaaaauaauccgaaaaaguuucaaggauauuuuggucaauuuauuuuuuguuaauuauuuuuuauauauuuuuauuaggugcgucucacuaaaauguacacacacuccaaauuucagaucauuccgauuuguagaaaaaacaugaaauuacuagacaaucgugaccguacgaugaacuuuggacggugaugaacauaacgaaauuacuguucauuuucaccuaaagggguu
(((.(((.(((((.((((.((((((((((((((.......((((((((((((((((.((((((.((((((((((((((((...((((((((((......((((((((((((((((((((((((((((((((((((.((.(((.(((.......(((..(((((..((((((((..((((((((.((.(((.((((((((((((((((((((.(((.............))))))))))))))))))))))).))).)).))))))))..))))))))..)))))...))).......))).))).)).)))))))))))))))))))))))))))))))))))).)))))).)))))))))))))))))))).)))))).))))))))))))))))......)))))))))))))).)))).))))).))).)))

Structure
   g   a     a    a              ccuaccc                a      c                gau    -      uuuuua                                    C  a   u   aaaaaau   -ga     cg        ca        u  u   u                    a   gaaaa 
aac ccu uaggu aaaa gaacagugauuucg       ucaucaccguccaaag ucaucg auggucacgauugucu   agug uuucau      uuuuuucuacaaaUCGGAAUGAUCUGAAAUUUGGAG gu ugu cau       agg   aucua  aaaaauau  aaaaaaua uu aca gaaauaaauugaccaaaaua ucc     a
||| ||| ||||| |||| ||||||||||||||       |||||||||||||||| |||||| ||||||||||||||||   |||| ||||||      |||||||||||||||||||||||||||||||||||| || ||| |||       |||   |||||  ||||||||  |||||||| || ||| |||||||||||||||||||| |||     g
uug gga aucca uuuu cuugucauuaaagc       aguaguggcagguuuc aguagc ugccagugcuaacaga   ucau aaagua      aaaaaagauguuuagccuuacuagacuuuaaaccuc ca aca gua       ucu   uggau  uuuuuaua  uuuuuuau aa ugu uuuuauuuaacugguuuuau agg     u
   g   a     c    a              -aauaca                a      a                ---    u      -----c                                    a  c   u   aaaucac   gcg     ua        ua        u  u   u                    -   aacuu 


Annotation confidence Not enough data
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Genome context
scaffold00053: 1878662-1879096 [+]

Database links

Mature atr-miR8562b

Accession MIMAT0033837
Description Amborella trichopoda atr-miR8562b mature miRNA
Sequence 113 - UCGGAAUGAUCUGAAAUUUGGAGC - 136
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089