Accession
MI0027440
Description
Amborella trichopoda
atr-MIR8562c precursor miRNA
Sequence
991
reads,
923.0
reads per million, 2 experiments
cggucagaguugucuaauaguuuuuuaauuuuuauuuuuuuucuauaaaUCAGAAUGAUCUGAAAUUUGGAGCguguguucauaaaaaauaggauaaucuaauaaaaauauaaaaauaaauagacuaaaauuccucugaaaauuugugagaguauuuuggucaauuuauauuuugaaauuuuuuuuuucauauuuuuauuaauugucucucacuaagauguacacgcacUCCAAAUUUCAGAUCAUUCCgauuuauagaaaacaaauaaaaauugaaauacuagcguacaaucgugaccg
((((((..(((((....((((.(((((((((((((((.(((((((((((((.((((((((((((((((((((.((((((.(((.......((((((((.((((((((((((....((((((.(((((((((..((((.(.......).)))).))))))))).)))))).....((((.......)))))))))))))))))))))).)).......))).)))))).)))))))))))))))))))).))))))))))))).))))))))))))))).))))....)))))..))))))
((((((..(((((....((((.(((((((((((((((.(((((((((((((.((((((((((((((((((((.((((((.(((.......((((((((.((((((((((((....((((((.(((((((((..((((.(.......).)))).))))))))).)))))).....((((.......)))))))))))))))))))))).)).......))).)))))).)))))))))))))))))))).))))))))))))).))))))))))))))).))))....)))))..))))))
Structure
ga cuaa u u A C u aaaaaau - c ----------------aaaa a uc g aa
cgguca guugu uagu uuuuaauuuuuauuu uuuucuauaaaUC GAAUGAUCUGAAAUUUGGAG gugugu cau ag gauaau uaauaaaaauau auaaau gacuaaaau cucu a a
|||||| ||||| |||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| ||| || |||||| |||||||||||| |||||| ||||||||| |||| | u
gccagu uaaca auca aaaguuaaaaauaaa aaaagauauuuag CUUACUAGACUUUAAACCUc cgcaca gua uc cuguua auuauuuuuaua uauuua cugguuuua gaga u u
gc ugcg u c C a u gaaucac u - cuuuuuuuuuuaaaguuuua a -u g gu
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
scaffold00221: 34564-34863 [+]
Database links
Mature atr-miR8562c-5p
| Accession | MIMAT0033838 |
| Description | Amborella trichopoda atr-miR8562c-5p mature miRNA |
| Sequence | 50 - UCAGAAUGAUCUGAAAUUUGGAGC - 73 |
| Evidence |
experimental
Illumina [1] |
Mature atr-miR8562c-3p
| Accession | MIMAT0058640 |
| Description | Amborella trichopoda atr-miR8562c-3p mature miRNA |
| Sequence | 230 - UCCAAAUUUCAGAUCAUUCC - 249 |
| Evidence |
experimental
unknown |
References
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