miRBase entry: atr-MIR8564

Stem-loop atr-MIR8564


Accession
MI0027442
Description
Amborella trichopoda atr-MIR8564 precursor miRNA


Sequence

584 reads, 518.0 reads per million, 2 experiments
uauauauacgaaaaaagcugggauuagcucacuaauucaUAUGAACAUAUGAGUCCAAcgguccagaaugaaucugggccgauccgacggucucgacuccauuucguguuugaauuuuaauuuuuuuuuuuacacauccaaaucauuugauguuuuuuuuucaucaagguguacucaauuuuggauuuguagaaaaaaaaUUAAAAUUCAAACACUAUcgaacaucgaugaucguuagaucaauucauauucaauuugagcuguugggcucauauguucauaugagcuaguggguuaauccuagcuuuauauauauauaua
((((((((.....(((((((((((((((((((((.(((((((((((((((((((((((((((.((((.(((((.((((..((((.(((((((((((.........(((((((((((((((((((((((((.(((.(((((((...(((((((.........)))))))...........))))))).)))))))))))))))))))))))))))).........)))).))))))).))))..)))).))))).)))).))))))))))))))))))))))))))).))))))))))))))))))))).....))))))))

Structure
        cgaaa                     a                           c    a     c    cc    c       -    cuccauuuc                         u   c       --------uca       uuu 
uauauaua     aaagcugggauuagcucacua uucaUAUGAACAUAUGAGUCCAAcggu caga ugaau uggg  gauc gacgguc ucga         guguuugaauuuuaauuuuuuuuuu aca auccaaa           uuugaug   u
||||||||     ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||  |||| ||||||| ||||         ||||||||||||||||||||||||| ||| |||||||           |||||||   u
auauauau     uuucgauccuaauugggugau gaguauacuuguauacucggguugucg guuu acuua acuu  cuag uugcuag agcu         CACAAACUUAAAAUUaaaaaaaaga ugu uagguuu           gaacuac   u
        auaua                     c                           a    a     u    aa    a       u    acaagcUAU                         -   u       uaacucaugug       uuu 


Annotation confidence Low
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Genome context
scaffold00021: 1421188-1421508 [+]

Database links

Mature atr-miR8564-5p

Accession MIMAT0058642
Description Amborella trichopoda atr-miR8564-5p mature miRNA
Sequence 40 - UAUGAACAUAUGAGUCCAA - 58
Evidence experimental
unknown

Mature atr-miR8564-3p

Accession MIMAT0033840
Description Amborella trichopoda atr-miR8564-3p mature miRNA
Sequence 201 - UUAAAAUUCAAACACUAU - 218
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089