miRBase entry: atr-MIR8566

Stem-loop atr-MIR8566


Accession
MI0027444
Description
Amborella trichopoda atr-MIR8566 precursor miRNA


Sequence

1668 reads, 8937 reads per million, 4 experiments
ucaacaucuccacuauguccauucagcucuaauuccaugaacaacaucuucuuuaaucucuaauuucucauggauuaucgacccaagguauaaaaaauaaucucuuccaagaaguaccaaaaagauauggggacuuauggccucauuguggguauggucuuuaauaaagcagaccaagauuuguguagcugacccaauuaauuaggaaaaggcuaugaugaugaugaugaugaugauugguuugaugaagauguugccaauagaAUUAGAGCUGGGUGGAUGAAGUGGagauguga
...(((((((((((.((((((((((((((((((((.((...((((((((((.((((...((((((((((((..((((((.(((((.(((((......................)))))........((((((.(....).))))))..))))).((((((..........))))))........((((((...((.........))....))))))...)))))).)))).)).)))))).)))).))))))))))...)).)))))))))))))))))))).)))))))))))..

Structure
uca           a                    c  gaa          u    ucu      -  -    gg      gacccaagguauaaaaaauaaucucuuccaagaaguaccaaaaagauauggggacuuauggccucauuguggguauggucuuuaauaaagcagaccaagauuugu      -gac  aau 
   acaucuccacu uguccauucagcucuaauuc au   caacaucuuc uuaa   cuaauu uc ucau  auuauc                                                                                                         guagcu    cc   u
   ||||||||||| |||||||||||||||||||| ||   |||||||||| ||||   |||||| || ||||  ||||||                                                                                                         ||||||    ||   a
   uguagaGGUGA GUAGGUGGGUCGAGAUUAag ua   guuguagaag aguu   gguuag ag agua  uaguag                                                                                                         uaucgg    gg   a
-ag           A                    a  acc          u    --u      u  u    -g      ------------------------------------------------------------------------------------------------------uag      aaaa  auu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold00024: 74289-74584 [-]

Database links

Mature atr-miR8566

Accession MIMAT0033842
Description Amborella trichopoda atr-miR8566 mature miRNA
Sequence 265 - AUUAGAGCUGGGUGGAUGAAGUGG - 288
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089