Stem-loop atr-MIR8566

Accession

MI0027444

Description

Amborella trichopoda atr-MIR8566 precursor miRNA

Sequence

1565 reads, 1246.0 reads per million, 2 experiments

ucaacaucuccacuauguccauucagcucuaauuccaugaacaacaucuucuuuaaucucuaauuucucauggauuaucgacccaagguauaaaaaauaaucucuuccaagaaguaccaAAAAGAUAUGGGGACUUAUGGCCUcauuguggguauggucuuuaauaaagcagaccaagauuuguguagcugacccaauuaauuaggaaaaggcuaugaugaugaugaugaugaugauugguuugaugaagauguugccaauagaAUUAGAGCUGGGUGGAUGAAGUGGagauguga
...(((((((((((.((((((((((((((((((((.((...((((((((((.((((...((((((((((((..((((((.(((((.(((((......................)))))........((((((.(....).))))))..))))).((((((..........))))))........((((((...((.........))....))))))...)))))).)))).)).)))))).)))).))))))))))...)).)))))))))))))))))))).)))))))))))..

Structure

uca           a                    c  gaa          u    ucu      -  -    gg      -----------------------------------------------------------------g     agguauaaaaaauaaucucuuccaagaaguaccaAAAAGAU      A U 
   acaucuccacu uguccauucagcucuaauuc au   caacaucuuc uuaa   cuaauu uc ucau  auuauc                                                                  accca                                         AUGGGG C U
   ||||||||||| |||||||||||||||||||| ||   |||||||||| ||||   |||||| || ||||  ||||||                                                                  |||||                                         |||||| |  
   uguagaGGUGA GUAGGUGGGUCGAGAUUAag ua   guuguagaag aguu   gguuag ag agua  uaguag                                                                  ugggu                                         uacUCC G A
-ag           A                    a  acc          u    --u      u  u    -g      uaguaucggaaaaggauuaauuaacccagucgauguguuuagaaccagacgaaauaauuucuggua     ---------------------------------------gu      G U 

Annotation confidence Low

Genome context

scaffold00024: 74289-74584 [-]

Mature atr-miR8566-5p

• Accession: MIMAT0058644
• Description: Amborella trichopoda atr-miR8566-5p mature miRNA
• Sequence: 120 - AAAAGAUAUGGGGACUUAUGGCCU - 143
• Evidence: experimental ; unknown

Mature atr-miR8566-3p

• Accession: MIMAT0033842
• Description: Amborella trichopoda atr-miR8566-3p mature miRNA
• Sequence: 265 - AUUAGAGCUGGGUGGAUGAAGUGG - 288
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089