miRBase entry: atr-MIR8569

Stem-loop atr-MIR8569


Accession
MI0027447
Description
Amborella trichopoda atr-MIR8569 precursor miRNA


Sequence

10105 reads, 9008.0 reads per million, 2 experiments
aagaaaaauaaauaugauaguuuaaaauaucaaauauguuagaauuuguuugucaauuucauuuagccaguugaacugguuaaaaccgguugguccaacuggccaaauuuagucauaaacauugauuuggauugguuuuuuuaccgaaucuaguuuuuacuugaggccugaacagcCAAAGCACCAGUCGACGGUCUGACcggucugaucaccaguucaguauguucuugaccacuauagaccgaagaaagucuuaauaacuaaggugaucaagaacuuaccgaACUGGCAAUCUGGUCGGUCGGACCaucuacugguccuuuuguugguuuggucuagauuaaaaauugaguuugugaaaaaccgaucaaagcaaguguuugauagauuuugaccaauuugacuugucgguuucaacuaguucaaucggcuaaacaaaaugguaacucuuuuucuaauauauuauauauuuauaaauuauuauuuauuuuucuu
(((((((((((..(((((((((((((((((..((((((((((((...(((..(((.(((..(((((((.((((((((((((.(((((((..((((.((.(((.((((.((.((((..((((((......((((((((((((...(((((.(((((((((.((.(((((....((((.((((.((((((.((.(((((((((((((.(((..(((((((.(((.((((((((.((((.(((....((((...)))).....))).)))).)))))))).))).)))))))..))).))))))))))))).)).)))))).)))).))))....))))).)).))))))))).))))).))))))))))))......)))))))))).)).)))).))).)).))))..))))))).)))))))))))).)))))))..)))))).))).....))))))))))))..)))))).))))))))))))))))))))))

Structure
           au           -      ca            --uuu   ug   a   ca       a            a       uu    c  c   c    u  a    ua      gauuug            uac     c         c  g     ugaa    C    C      C  C             u   ca       a   u        c    a   -accg    a 
aagaaaaauaa  augauaguuua aaauau  aauauguuagaa     guu  uca uuu  uuuagcc guugaacugguu aaaccgg  gguc aa ugg caaa uu guca  aacauu      gauugguuuuuu   cgaau uaguuuuua uu aggcc    cagc AAAG ACCAGU GA GGUCUGACcgguc gau  ccaguuc gua guucuuga cacu uag     aaga  
|||||||||||  ||||||||||| ||||||  ||||||||||||     |||  ||| |||  ||||||| |||||||||||| |||||||  |||| || ||| |||| || ||||  ||||||      ||||||||||||   ||||| ||||||||| || |||||    |||| |||| |||||| || ||||||||||||| |||  ||||||| ||| |||||||| |||| |||     |||| a
uucuuuuuauu  uauuauuaaau uuuaua  uuauauaaucuu     caa  ggu aaa  aaaucgg uaacuugaucaa uuuggcu  ucag uu acc guuu ag uagu  uuguga      cuagccaaaaag   guuug guuaaaaau ag ucugg    guug uuuc ugguca cu CCAGGCUGGCUGG CUA  GGUCAag cau caagaacu gugg auc     uucu  
           --           a      ua            uuucu   -u   -   ac       c            c       gu    u  a   a    u  a    --      acgaaa            --u     a         u  a     uuug    u    c      u  a             U   AC       c   u        a    a   aauaa    g 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
scaffold00024: 6186109-6186603 [+]

Database links

Mature atr-miR8569-5p

Accession MIMAT0058647
Description Amborella trichopoda atr-miR8569-5p mature miRNA
Sequence 177 - CAAAGCACCAGUCGACGGUCUGAC - 200
Evidence experimental
unknown

Mature atr-miR8569-3p

Accession MIMAT0033845
Description Amborella trichopoda atr-miR8569-3p mature miRNA
Sequence 285 - ACUGGCAAUCUGGUCGGUCGGACC - 308
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089