miRBase entry: atr-MIR8565b

Stem-loop atr-MIR8565b


Accession
MI0027449
Description
Amborella trichopoda atr-MIR8565b precursor miRNA


Sequence

8608 reads, 6578.0 reads per million, 2 experiments
aggaauagacaacuacuauuuguuaauuaaauaaagagaaaugacacuauaagacccucccacacccaugugaguaggaccccaaaggaucaccauuaaaUUUGGCACAGAUCUCUAGAAAAGUuaucacaugggugugggacuugACUUUUCUAGAGAUCUGUGccaaauuugauggugaucauuugggguccuacucccaugggugugggagggucucauagggucauuacucuuaaauaaauuuacuaaauaaauaauuaaauuauuauugcu
..((((((.......))))))((.((((.....(((((.((((((.((((.(((((((((((((((((((.(((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((....)))))....))))))))))))))))))))))))))))))))))))))).))))))))))))))).))))))))))))))))))).)))).)))))).))))).....)))).))......((((((......))))))...

Structure
------aggaauagacaacuacuauuu  u    aaaua     a      a    a                   u               g                                       ----     u 
                           gu aauu     aagag aaugac cuau agacccucccacacccaug gaguaggaccccaaa gaucaccauuaaaUUUGGCACAGAUCUCUAGAAAAGUua    ucaca g
                           || ||||     ||||| |||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    |||||  
                           ca uuaa     uucuc uuacug gaua ucugggaggguguggguac cucauccugggguuu cuagugguaguuuaaaccGUGUCUAGAGAUCUUUUCAgu    ggugu g
ucguuauuauuaaauuaauaaauaaau  u    auaaa     a      g    c                   c               a                                       ucag     g 


Annotation confidence Low
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Genome context
scaffold00033: 3597900-3598175 [+]

Database links

Mature atr-miR8565b-5p

Accession MIMAT0033847
Description Amborella trichopoda atr-miR8565b-5p mature miRNA
Sequence 101 - UUUGGCACAGAUCUCUAGAAAAGU - 124
Evidence experimental
Illumina [1]

Mature atr-miR8565b-3p

Accession MIMAT0058649
Description Amborella trichopoda atr-miR8565b-3p mature miRNA
Sequence 147 - ACUUUUCUAGAGAUCUGUG - 165
Evidence experimental
unknown

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089