miRBase entry: atr-MIR8565c

Stem-loop atr-MIR8565c


Accession
MI0027450
Description
Amborella trichopoda atr-MIR8565c precursor miRNA


Sequence

8302 reads, 6477.0 reads per million, 2 experiments
guuauaaaauauucuuaguauuaucuuaagaguaaugauccucugagacccucccacacccauguguguaggacuccaaaggaucacauuuaaaUUUGGCACAGAUCUCUAGAAAAGUuaucauauggguguggaacuugACUUUUCUAGAGAUCUGUGccaaauuuauugguaaucuuuugggguccuacacacauggauguggaagggucucauaacguccuuucccuuaucuuaaaaucuauuuucauaccuaauuagaaaauuuuaaaau
.........(((((((((.......)))))))))..(((....(((((((((.(((((.(((((((((((((((((((((((((.((...(((((((((((((((((((((((((((((((((((....)))))....))))))))))))))))))))))))))))))...)).))))))))))))))))))))))))).))))).)))))))))....)))............((((((((((.((........)).))))...))))))...

Structure
----------------guuauaaaauauucuuaguauuaucuuaagaguaau   ccuc         c     c                         c  auu                              ----     u 
                                                    gau    ugagacccu ccaca ccauguguguaggacuccaaaggau ac   uaaaUUUGGCACAGAUCUCUAGAAAAGUua    ucaua g
                                                    |||    ||||||||| ||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||    |||||  
                                                    cug    acucuggga ggugu gguacacacauccugggguuuucua ug   auuuaaaccGUGUCUAGAGAUCUUUUCAgu    ggugu g
uaaaauuuuaaaagauuaauccauacuuuuaucuaaaauucuauucccuuuc   caau         a     a                         a  guu                              ucaa     g 


Annotation confidence Low
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Genome context
scaffold00080: 3094205-3094478 [+]

Database links

Mature atr-miR8565c-5p

Accession MIMAT0033848
Description Amborella trichopoda atr-miR8565c-5p mature miRNA
Sequence 95 - UUUGGCACAGAUCUCUAGAAAAGU - 118
Evidence experimental
Illumina [1]

Mature atr-miR8565c-3p

Accession MIMAT0058650
Description Amborella trichopoda atr-miR8565c-3p mature miRNA
Sequence 141 - ACUUUUCUAGAGAUCUGUG - 159
Evidence experimental
unknown

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089