miRBase entry: atr-MIR8565e

Stem-loop atr-MIR8565e


Accession
MI0027452
Description
Amborella trichopoda atr-MIR8565e precursor miRNA


Sequence

8305 reads, 6304.0 reads per million, 2 experiments
augaauuuuuaguuucaguaauaauaauaaagaguaaugauccuaugagacccucccacacccauguauguaggaccccaaaggaucaccauuaaauUUGGCACAGAUCUCUAGAAAAguuaucacaugagugugggacuugaCUUUUCUAGAGAUCUGUGCCaaauuuaaugaugaucauuugggguccuacacacaugggugugagagggucucauaggaucauuacucaauaauaaauaaaagaaaaaagaagaugcau
.((((........))))..............((((((((((((((((((((((((.(((((((((((.((((((((((((((.(((((.((((((((((((((((((((((((((((((((((((((....)))))....))))))))))))))))))))))))))))))))).))))).)))))))))))))).))))))))))).))))))))))))))))))))))))...............................

Structure
augaauuuuuaguuucaguaauaauaauaaa                        c           a              g     c                                 ----     u 
                               gaguaaugauccuaugagacccuc cacacccaugu uguaggaccccaaa gauca cauuaaauUUGGCACAGAUCUCUAGAAAAguua    ucaca g
                               |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||    |||||  
                               cucauuacuaggauacucugggag guguggguaca acauccugggguuu cuagu guaauuuaaaCCGUGUCUAGAGAUCUUUUCagu    ggugu a
uacguagaagaaaaaagaaaauaaauaauaa                        a           c              a     a                                 ucag     g 


Annotation confidence Medium
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Genome context
scaffold00159: 262391-262652 [+]

Database links

Mature atr-miR8565e-5p

Accession MIMAT0033850
Description Amborella trichopoda atr-miR8565e-5p mature miRNA
Sequence 98 - UUGGCACAGAUCUCUAGAAAA - 118
Evidence experimental
Illumina [1]

Mature atr-miR8565e-3p

Accession MIMAT0058652
Description Amborella trichopoda atr-miR8565e-3p mature miRNA
Sequence 144 - CUUUUCUAGAGAUCUGUGCC - 163
Evidence experimental
unknown

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089