miRBase entry: atr-MIR8570

Stem-loop atr-MIR8570


Accession
MI0027454
Description
Amborella trichopoda atr-MIR8570 precursor miRNA


Sequence

853 reads, 1723 reads per million, 4 experiments
uauauaggaauuguauacuaugagaccauuuauauuuaguguauggaggucacagcuacuccuagccauuagaugucaaauugauggcuugaggguugucacaaaguucaagaaauuuuuuuuugaacuuugagucuugucaaugacacacucacaaccgcccaauauaaaaucugacaaaccuacuuguauuaaaaauacauggugucuuuuguauucauuuucauguguauauauauaugaaaaagcauagaaagagacuauuuauguuuaauacaaagaggucacaaucacucuuguccgucacauuucaaaucggguAGUUGGGAGUGCGUCAUUGACUAGacuuaaacuuuagaagaaaauuuucuaaaacuuugugacaugccccuggcgauucacuuugacaucuaauggaugguagcaauuaugaccuccuuguaacgaagacaaauguucucauagucaacagucccuaguaua
((((((((.(((((..(((((((((.(((((...(((.((....((((((((..((((((.....(((((((((((((((.((((.(((.(.((((((((((((((((..(((((((((((((((((.(((((((((.(((((((((.(((((.((((.((((......((((.((((..((((..((((((((((.(((.(((((.((((((.(((.(.(((((((((((....))))))))))).).))))))))).))))).))).))))))))))..)))).((((......))))..)))).))))......)))).)))).))))).))))))))).))))))))).)))))))))))).)))))..)))))))))))).))))).))).).))).)))))))))))))))..)))))).....)))))))).....)))))...))))).)))))))))..))))).))).)))))

Structure
     -   a     au         c     aua   a  -guau        ---ca      ccuag               u   - g   u a    -            ca     -            c         u         a     a    c    aauaua    c    ---------------aa    ac          a   c     g      g   u a           a 
uauau agg auugu  acuaugaga cauuu   uuu gu     ggagguca     gcuacu     ccauuagaugucaaa uga u gcu g gggu ugucacaaaguu  agaaa uuuuuuuuugaa uuugagucu gucaaugac cacuc caac gccc      aaau ugac                 accu  uuguauuaaa aua auggu ucuuuu uau c uuuucaugugu u
||||| ||| |||||  ||||||||| |||||   ||| ||     ||||||||     ||||||     ||||||||||||||| ||| | ||| | |||| ||||||||||||  ||||| |||||||||||| ||||||||| ||||||||| ||||| |||| ||||      |||| ||||                 ||||  |||||||||| ||| ||||| |||||| ||| | |||||||||||  
auaug ucc ugaca  ugauacucu guaaa   aag ca     ccuccagu     cgaugg     gguaaucuacaguuu acu a cgg c cccg acaguguuucaa  ucuuu aaaagaagauuu aaauucaGA CAGUUACUG GUGAG GUUG uggg      uuua acug                 ugga  aacauaauuu uau uauca agaaag aua g aaaaguauaua a
     a   c     ac         u     cag   -  auguu        auuaa      ---ua               c   u g   u -    u            aa     u            c         U         C     G    A    cuaaac    c    ccuguucucacuaacac    ga          g   u     g      -   c a           u 


Annotation confidence High
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Genome context
scaffold00002: 9634329-9634811 [-]

Database links

Mature atr-miR8570

Accession MIMAT0033852
Description Amborella trichopoda atr-miR8570 mature miRNA
Sequence 322 - AGUUGGGAGUGCGUCAUUGACUAG - 345
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24357323
    The Amborella genome and the evolution of flowering plants
    "Amborella Genome Project"
    "Science (2013) 342:1241089