Stem-loop atr-MIR8572

Accession

MI0027457

Description

Amborella trichopoda atr-MIR8572 precursor miRNA

Sequence

1880 reads, 1932.0 reads per million, 2 experiments

caacgauaggguggcgcguccccaguggaguugccaguuggucggaccugauuucucaucguuccagguggccccaaauaugggUGACCCGGUCGUUGGAAUCCUCUCucaaacaaucgcgaagcacacaugggccuugcgGUUGUUUGAGAGAGGAUUCCcccgaccgguucaccgauauccgggacgacccaggaugacaagaaaucagauccgaccacucacacuaugaagcauuuuguauuug
(((..((((((((...(((....((((((((........(((((((.(((((((((..((((((..(((.(.(((..((((.(((((.(((((((..(((((((((((((((((((((((((.((........)).)))))))))))))))))))))))))..))))))).))))).))))..))).).)))..))))))..))))))))).))))))))))).)))))))...))))))))..)))

Structure

   cg        gcg   cccc    -    ugccaguu       c         ca      ca   g c   aa    g     C       UU                         a  aca 
caa  auagggug   cgu    agug gagu        ggucgga cugauuucu  ucguuc  ggu g ccc  auau ggUGA CCGGUCG  GGAAUCCUCUCucaaacaaucgcga gc   c
|||  ||||||||   |||    |||| ||||        ||||||| |||||||||  ||||||  ||| | |||  |||| ||||| |||||||  ||||||||||||||||||||||||| ||    
guu  uguuuuac   gua    ucac cuca        ccagccu gacuaaaga  aguagg  cca c ggg  uaua ccacu ggccagc  CCUUAGGAGAGAGUUUGUUGgcguu cg   a
   ua        gaa   ----    a    --------       a         ac      ac   g a   cc    g     u       cc                         c  ggu 

Annotation confidence Low

Genome context

scaffold00028: 4881376-4881622 [+]

Mature atr-miR8572-5p

• Accession: MIMAT0033855
• Description: Amborella trichopoda atr-miR8572-5p mature miRNA
• Sequence: 85 - UGACCCGGUCGUUGGAAUCCUCUC - 108
• Evidence: experimental ; Illumina [1]

Mature atr-miR8572-3p

• Accession: MIMAT0058656
• Description: Amborella trichopoda atr-miR8572-3p mature miRNA
• Sequence: 142 - GUUGUUUGAGAGAGGAUUCC - 161
• Evidence: experimental ; unknown

References

1. PubMed ID: 24357323
   The Amborella genome and the evolution of flowering plants
   "Amborella Genome Project"
   "Science (2013) 342:1241089